Transcript: LINC00052:8

Basic information

LNCipedia transcript ID: LINC00052:8 
HGNC Gene Symbol: LINC00052    
HGNC Full Gene Name: long intergenic non-protein coding RNA 52
Ensembl Gene ID: ENSG00000259527
Ensembl Transcript ID: ENST00000560153
Location (hg38): chr15:87576929-87579866
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1966 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560153.2
Alternative gene names: ENSG00000259527.2; LINC00052


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.3209 non-coding 
CPAT coding probability 2.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00052:8 no no no no

Available literature

  1. Salameh (2017), HER3 and LINC00052 interplay promotes tumor growth in breast cancer., Oncotarget
  2. Zhu (2017), LINC00052 upregulates EPB41L3 to inhibit migration and invasion of hepatocellular carcinoma by binding miR-452-5p., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AGBL1-4:3
4.1 lnc-AGBL1-4:3
5.0 lnc-AGBL1-4:3
5.1 LINC00052:4
5.2 LINC00052:8