Transcript: LINC00112:7

Basic information

LNCipedia transcript ID: LINC00112:7 
HGNC Gene Symbol: LINC00112    
HGNC Full Gene Name: long intergenic non-protein coding RNA 112
Ensembl Gene ID: ENSG00000232401
Ensembl Transcript ID: ENST00000432830
Location (hg38): chr21:41716436-41717580
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 522 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000432830.1; LINC00112-001; OTTHUMT00000195203.1
Alternative gene names: ENSG00000232401.1; LINC00112; OTTHUMG00000086769.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.637 non-coding 
CPAT coding probability 4.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00112:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MX1-3:5
4.0 LINC00112:7
4.1 LINC00112:7
5.0 LINC00112:7
5.1 LINC00112:7
5.2 LINC00112:7