Transcript: LINC00113:1

Basic information

LNCipedia transcript ID: LINC00113:1 
HGNC Gene Symbol: LINC00113    
HGNC Full Gene Name: long intergenic non-protein coding RNA 113
Ensembl Gene ID: ENSG00000225298
Ensembl Transcript ID: ENST00000411460
RefSeq ID: NR_024357
Location (hg38): chr21:27722379-27751233
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 524 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028740; ENST00000411460; ENST00000411460.1; LINC00113-001; OTTHUMT00000171683.1; NONHSAT081581; NR_024357; ENST00000411460.5; NR_024357.2
Alternative gene names: XLOC_013897; linc-USP16-8; ENSG00000225298; NCRNA00113; ENSG00000225298.1; LINC00113; OTTHUMG00000078708.1; ENSG00000225298.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.419 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00113:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP16-6:1
3.1 lnc-USP16-6:1
4.0 LINC00113:1
4.1 LINC00113:1
5.0 LINC00113:1
5.1 LINC00113:1
5.2 LINC00113:1