Transcript: LINC00113:3

Basic information

LNCipedia transcript ID: LINC00113:3 
HGNC Gene Symbol: LINC00113    
HGNC Full Gene Name: long intergenic non-protein coding RNA 113
Ensembl Gene ID: ENSG00000225298
Ensembl Transcript ID: ENST00000442550
Location (hg38): chr21:27724799-27751233
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442550; ENST00000442550.1; LINC00113-003; OTTHUMT00000171685.1; NONHSAT081583
Alternative gene names: ENSG00000225298; NCRNA00113; ENSG00000225298.1; LINC00113; OTTHUMG00000078708.1; ENSG00000225298.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.3734 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00113:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP16-6:3
3.1 lnc-USP16-6:3
4.0 LINC00113:3
4.1 LINC00113:3
5.0 LINC00113:3
5.1 LINC00113:3
5.2 LINC00113:3