Transcript: LINC00114:12

Basic information

LNCipedia transcript ID: LINC00114:12 
HGNC Gene Symbol: LINC00114    
HGNC Full Gene Name: long intergenic non-protein coding RNA 114
Ensembl Gene ID: ENSG00000223806
Ensembl Transcript ID: ENST00000448579
Location (hg38): chr21:38739021-38742053
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 681 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028926; ENST00000448579; ENST00000448579.1; LINC00114-001; OTTHUMT00000207549.1; NONHSAT082121; ENST00000448579.5
Alternative gene names: XLOC_014073; linc-ERG-3; ENSG00000223806; NCRNA00114; ENSG00000223806.2; LINC00114; OTTHUMG00000090771.1; ENSG00000223806.3; ENSG00000223806.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.8897 non-coding 
CPAT coding probability 2.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00114:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ERG-2:9
3.1 lnc-ERG-2:9
4.0 LINC00114:12
4.1 LINC00114:12
5.0 LINC00114:12
5.1 LINC00114:12
5.2 LINC00114:12