Transcript: LINC00115:14

Basic information

LNCipedia transcript ID: LINC00115:14 
LNCipedia gene ID: LINC00115
Location (hg38): chr1:703685-720200
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 274 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000448605.1; RP5-857K21.4-003; OTTHUMT00000006712.1
Alternative gene names: ENSG00000230021.1; RP5-857K21.4; OTTHUMG00000002331.3; FLJ22639


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.5675 non-coding 
CPAT coding probability 19.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00115:14 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F16-1:4
4.0 LINC00115:14
4.1 LINC00115:14
5.0 LINC00115:14
5.1 LINC00115:14
5.2 LINC00115:14