Transcript: LINC00115:16

Basic information

LNCipedia transcript ID: LINC00115:16 
LNCipedia gene ID: LINC00115
Location (hg38): chr1:701936-720150
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 629 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000441245.1; RP5-857K21.4-002; OTTHUMT00000006711.1; NONHSAT000097; ENST00000441245.5
Alternative gene names: ENSG00000230021.1; RP5-857K21.4; OTTHUMG00000002331.3; ENSG00000230021.3; ENSG00000230021.8; FLJ22639


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.3957 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00115:16 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F16-1:6
4.0 LINC00115:16
4.1 LINC00115:16
5.0 LINC00115:16
5.1 LINC00115:16
5.2 LINC00115:16