Transcript: LINC00115:17

Basic information

LNCipedia transcript ID: LINC00115:17 
LNCipedia gene ID: LINC00115
Location (hg38): chr1:627377-629010
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 802 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000452176; ENST00000452176.1; RP5-857K21.5-001; OTTHUMT00000006714.1; NONHSAT000087
Alternative gene names: ENSG00000223659; RP5-857K21.5; ENSG00000223659.1; OTTHUMG00000002332.1; ENSG00000230021.8; RP5-857K21.4; FLJ22639


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.2225 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00115:17 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR4F16-1:1
3.1 lnc-OR4F16-2:1
4.0 LINC00115:17
4.1 LINC00115:17
5.0 LINC00115:17
5.1 LINC00115:17
5.2 LINC00115:17