Transcript: LINC00115:18

Basic information

LNCipedia transcript ID: LINC00115:18 
LNCipedia gene ID: LINC00115
RefSeq ID: NR_125957
Location (hg38): chr1:627380-629009
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 798 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125957; NR_125957.1
Alternative gene names: FLJ22639; LOC101928626


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -41.2225 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00115:18 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F16-2:2
4.0 LINC00115:18
4.1 LINC00115:18
5.0 LINC00115:18
5.1 LINC00115:18
5.2 LINC00115:18