Transcript: LINC00115:19

Basic information

LNCipedia transcript ID: LINC00115:19 
LNCipedia gene ID: LINC00115
Location (hg38): chr1:585990-629008
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1004 bp
Exons: 6
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000634833.1
Alternative gene names: ENSG00000230021.8; RP5-857K21.4; FLJ22639


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 20.2153 non-coding 
CPAT coding probability 80.34% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00115:19 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00115:19
4.1 LINC00115:19
5.0 LINC00115:19
5.1 LINC00115:19
5.2 LINC00115:19