Transcript: LINC00115:21

Basic information

LNCipedia transcript ID: LINC00115:21 
LNCipedia gene ID: LINC00115
Location (hg38): chr1:594453-595217
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 439 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: NONHSAT000082; ENST00000440196.2
Alternative gene names: ENSG00000239664.2; RP5-857K21.3; ENSG00000230021.8; RP5-857K21.4; FLJ22639


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.0421 non-coding 
CPAT coding probability 7.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00115:21 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F16-10:2
4.0 LINC00115:21
4.1 LINC00115:21
5.0 LINC00115:21
5.1 LINC00115:21
5.2 LINC00115:21