Transcript: LINC00115:22

Basic information

LNCipedia transcript ID: LINC00115:22 
LNCipedia gene ID: LINC00115
Location (hg38): chr1:585989-588453
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 842 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: TCONS_00000442; ENST00000417636; ENST00000417636.1; RP5-857K21.1-001; OTTHUMT00000006453.1; NONHSAT000079
Alternative gene names: XLOC_000663; linc-ZNF692-2; ENSG00000231709; RP5-857K21.1; ENSG00000231709.1; OTTHUMG00000002261.1; ENSG00000230021.8; RP5-857K21.4; FLJ22639


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.6991 non-coding 
CPAT coding probability 6.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00115:22 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR4F16-4:1
3.1 lnc-OR4F16-5:1
4.0 LINC00115:22
4.1 LINC00115:22
5.0 LINC00115:22
5.1 LINC00115:22
5.2 LINC00115:22