Transcript: LINC00115:30

Basic information

LNCipedia transcript ID: LINC00115:30 
LNCipedia gene ID: LINC00115
Location (hg38): chr1:266105-297502
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2513 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000424587.1; AP006222.2-001; OTTHUMT00000007242.1; NONHSAT000043
Alternative gene names: ENSG00000228463.3; AP006222.2; OTTHUMG00000002553.1; FLJ22639


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.1071 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00115:30 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM138A-5:1
4.0 lnc-OR4F16-5:5
4.1 LINC00115:30
5.0 LINC00115:30
5.1 LINC00115:30
5.2 LINC00115:30