Transcript: LINC00115:33

Basic information

LNCipedia transcript ID: LINC00115:33 
LNCipedia gene ID: LINC00115
Location (hg38): chr1:258144-268807
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1925 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000448958.1; AP006222.2-002; OTTHUMT00000007243.1
Alternative gene names: ENSG00000228463.3; AP006222.2; OTTHUMG00000002553.1; ENSG00000228463.4; ENSG00000228463.9; FLJ22639


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 103.8638 coding 
CPAT coding probability 91.19% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00115:33 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM138A-5:3
4.0 lnc-OR4F16-5:8
4.1 LINC00115:33
5.0 LINC00115:33
5.1 LINC00115:33
5.2 LINC00115:33