Transcript: LINC00115:43

Basic information

LNCipedia transcript ID: LINC00115:43 
LNCipedia gene ID: LINC00115
Ensembl Gene ID: ENSG00000238009
Ensembl Transcript ID: ENST00000471248
Location (hg38): chr1:110953-129173
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 629 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000471248.1; RP11-34P13.7-002; OTTHUMT00000003687.1; NONHSAT000021
Alternative gene names: ENSG00000238009.2; RP11-34P13.7; OTTHUMG00000001096.2; ENSG00000238009.6; FLJ22639; AL627309.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.4002 non-coding 
CPAT coding probability 1.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00115:43 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM138A-1:3
4.0 lnc-OR4F16-5:18
4.1 LINC00115:43
5.0 LINC00115:43
5.1 LINC00115:43
5.2 LINC00115:43