Transcript: LINC00160:1

Basic information

LNCipedia transcript ID: LINC00160:1 
LNCipedia gene ID: LINC00160
RefSeq ID: NR_024351
Location (hg38): chr21:34723807-34737182
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 694 bp
Exons: 6
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT081887; NR_024351; NR_024351.2
Alternative gene names: ; LINC00160


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.3835 non-coding 
CPAT coding probability 4.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00160:1 no no no no

Available literature

  1. Jonsson (2015), Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer., Mol. Endocrinol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RUNX1-2:2
4.0 LINC00160:1
4.1 LINC00160:1
5.0 LINC00160:1
5.1 LINC00160:1
5.2 LINC00160:1