Transcript: LINC00160:2

Basic information

LNCipedia transcript ID: LINC00160:2 
HGNC Gene Symbol: LINC00160    
HGNC Full Gene Name: long intergenic non-protein coding RNA 160
Ensembl Gene ID: ENSG00000230978
Ensembl Transcript ID: ENST00000430635
Location (hg38): chr21:34723807-34737181
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 693 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430635; ENST00000430635.1; LINC00160-001; OTTHUMT00000194141.1
Alternative gene names: ENSG00000230978; NCRNA00160; ENSG00000230978.1; LINC00160; OTTHUMG00000086234.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.3835 non-coding 
CPAT coding probability 4.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00160:2 no no no no

Available literature

  1. Jonsson (2015), Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer., Mol. Endocrinol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RUNX1-2:1
3.1 lnc-RUNX1-2:1
4.0 LINC00160:2
4.1 LINC00160:2
5.0 LINC00160:2
5.1 LINC00160:2
5.2 LINC00160:2