Transcript: LINC00161:4

Basic information

LNCipedia transcript ID: LINC00161:4 
HGNC Gene Symbol: LINC00161    
HGNC Full Gene Name: long intergenic non-protein coding RNA 161
Ensembl Gene ID: ENSG00000226935
Ensembl Transcript ID: ENST00000412526
RefSeq ID: NR_026552
Location (hg38): chr21:28539318-28540355
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 870 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000412526; ENST00000412526.1; LINC00161-001; OTTHUMT00000171735.1; NONHSAT081601; NR_026552; ENST00000412526.5; NR_026552.1
Alternative gene names: ENSG00000226935; NCRNA00161; ENSG00000226935.2; LINC00161; OTTHUMG00000078748.1; ENSG00000226935.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.8834 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00161:4 no no no no

Available literature

  1. Wang (2016), Long non-coding RNA LINC00161 sensitises osteosarcoma cells to cisplatin-induced apoptosis by regulating the miR-645-IFIT2 axis., Cancer Lett.
  2. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP16-2:3
3.1 lnc-USP16-2:2
4.0 LINC00161:4
4.1 LINC00161:4
5.0 LINC00161:4
5.1 LINC00161:4
5.2 LINC00161:4