Transcript: LINC00163:1

Basic information

LNCipedia transcript ID: LINC00163:1 
LNCipedia gene ID: LINC00163
Location (hg38): chr21:44991272-44994086
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 744 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00028789
Alternative gene names: XLOC_014120; linc-ITGB2-2; NLC1-A; NLC1A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.4487 non-coding 
CPAT coding probability 12.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00163:1 no no no no

Available literature

  1. Kawashima (2006), Genomewide association analysis of human narcolepsy and a new resistance gene., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C21orf67-2:1
3.1 lnc-C21orf67-2:1
4.0 LINC00163:1
4.1 LINC00163:1
5.0 LINC00163:1
5.1 LINC00163:1
5.2 LINC00163:1