Transcript: LINC00163:2

Basic information

LNCipedia transcript ID: LINC00163:2 
LNCipedia gene ID: LINC00163
Location (hg38): chr21:44989866-44994086
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2153 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00028762
Alternative gene names: XLOC_014120; linc-ITGB2-2; NLC1-A; NLC1A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.5854 non-coding 
CPAT coding probability 85.91% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00163:2 no no no no

Available literature

  1. Kawashima (2006), Genomewide association analysis of human narcolepsy and a new resistance gene., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C21orf67-2:2
3.1 lnc-C21orf67-2:3
4.0 LINC00163:2
4.1 LINC00163:2
5.0 LINC00163:2
5.1 LINC00163:2
5.2 LINC00163:2