Transcript: LINC00163:3

Basic information

LNCipedia transcript ID: LINC00163:3 
HGNC Gene Symbol: LINC00163    
HGNC Full Gene Name: long intergenic non-protein coding RNA 163
Ensembl Gene ID: ENSG00000234880
Ensembl Transcript ID: ENST00000434081
RefSeq ID: NR_033840
Location (hg38): chr21:44989864-44994086
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2155 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000434081; ENST00000434081.1; LINC00163-001; OTTHUMT00000206655.1; NONHSAT082906; NR_033840; NR_033840.1
Alternative gene names: ENSG00000234880; NCRNA00163; ENSG00000234880.1; LINC00163; OTTHUMG00000090296.1; NLC1-A; NLC1A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.5854 non-coding 
CPAT coding probability 85.91% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00163:3 no no no no

Available literature

  1. Kawashima (2006), Genomewide association analysis of human narcolepsy and a new resistance gene., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C21orf67-2:3
3.1 lnc-C21orf67-2:2
4.0 LINC00163:3
4.1 LINC00163:3
5.0 LINC00163:3
5.1 LINC00163:3
5.2 LINC00163:3