Transcript: LINC00167:2

Basic information

LNCipedia transcript ID: LINC00167:2 
HGNC Gene Symbol: LINC00167    
HGNC Full Gene Name: long intergenic non-protein coding RNA 167
Ensembl Gene ID: ENSG00000233220
Ensembl Transcript ID: ENST00000530583
Location (hg38): chr11:130002938-130004356
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1419 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530583; ENST00000530583.1; LINC00167-002; OTTHUMT00000386085.1; NONHSAT025107
Alternative gene names: ENSG00000233220; NCRNA00167; ENSG00000233220.3; LINC00167; OTTHUMG00000165763.1; FLJ31394


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.9901 non-coding 
CPAT coding probability 41.27% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00167:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APLP2-1:1
3.1 lnc-APLP2-1:1
4.0 LINC00167:2
4.1 LINC00167:2
5.0 LINC00167:2
5.1 LINC00167:2
5.2 LINC00167:2