Transcript: LINC00200:2

Basic information

LNCipedia transcript ID: LINC00200:2 
HGNC Gene Symbol: LINC00200    
HGNC Full Gene Name: long intergenic non-protein coding RNA 200
Ensembl Gene ID: ENSG00000229205
Ensembl Transcript ID: ENST00000583117
Location (hg38): chr10:1159804-1160997
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 632 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583117.1; LINC00200-002; OTTHUMT00000442508.1; NONHSAT010910
Alternative gene names: ENSG00000229205.2; LINC00200; OTTHUMG00000017539.3; FLJ40354


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.4547 non-coding 
CPAT coding probability 6.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00200:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR37-1:2
4.0 LINC00200:2
4.1 LINC00200:2
5.0 LINC00200:2
5.1 LINC00200:2
5.2 LINC00200:2