Transcript: LINC00205:17

Basic information

LNCipedia transcript ID: LINC00205:17 
LNCipedia gene ID: LINC00205
Location (hg38): chr21:45293285-45297354
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1391 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: TCONS_00028859; ENST00000433465; ENST00000433465.1; LINC00205-001; OTTHUMT00000206823.2; NONHSAT082946
Alternative gene names: XLOC_013981; linc-COL18A1-4; ENSG00000223768; NCRNA00205; ENSG00000223768.1; LINC00205; OTTHUMG00000090403.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.5857 non-coding 
CPAT coding probability 12.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00205:17 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADARB1-3:15
3.1 lnc-ADARB1-3:15
4.0 LINC00205:17
4.1 LINC00205:17
5.0 LINC00205:17
5.1 LINC00205:17
5.2 LINC00205:17