Transcript: LINC00205:3

Basic information

LNCipedia transcript ID: LINC00205:3 
HGNC Gene Symbol: LINC00205    
HGNC Full Gene Name: long intergenic non-protein coding RNA 205
Ensembl Gene ID: ENSG00000223768
Ensembl Transcript ID: ENST00000454115
Location (hg38): chr21:45288052-45290578
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 389 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454115; ENST00000454115.2; BX322557.10-001; OTTHUMT00000206806.1; ENST00000454115.6
Alternative gene names: ENSG00000215447; BX322557.10; ENSG00000215447.3; OTTHUMG00000090398.1; ENSG00000215447.7; ; BX322557.1; ENSG00000223768.2; LINC00205


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00205:3 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADARB1-3:3
3.1 lnc-ADARB1-3:2
4.0 LINC00205:3
4.1 LINC00205:3
5.0 LINC00205:3
5.1 LINC00205:3
5.2 LINC00205:3