Transcript: LINC00205:5

Basic information

LNCipedia transcript ID: LINC00205:5 
LNCipedia gene ID: LINC00205
Location (hg38): chr21:45288061-45297351
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4576 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029246; NONHSAT082934
Alternative gene names: XLOC_013981; linc-COL18A1-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 38.1783 non-coding 
CPAT coding probability 23.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00205:5 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADARB1-3:4
3.1 lnc-ADARB1-3:4
4.0 LINC00205:5
4.1 LINC00205:5
5.0 LINC00205:5
5.1 LINC00205:5
5.2 LINC00205:5