Transcript: LINC00239:2

Basic information

LNCipedia transcript ID: LINC00239:2 
HGNC Gene Symbol: LINC00239    
HGNC Full Gene Name: long intergenic non-protein coding RNA 239
Ensembl Gene ID: ENSG00000258512
Ensembl Transcript ID: ENST00000556973
Location (hg38): chr14:101730437-101732522
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 639 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556973.1
Alternative gene names: ENSG00000258512.1; LINC00239;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -336.4809 non-coding 
CPAT coding probability 21.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00239:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00239:2
4.1 LINC00239:2
5.0 LINC00239:2
5.1 LINC00239:2
5.2 LINC00239:2