Transcript: LINC00240:1

Basic information

LNCipedia transcript ID: LINC00240:1 
HGNC Gene Symbol: LINC00240    
HGNC Full Gene Name: long intergenic non-protein coding RNA 240
Ensembl Gene ID: ENSG00000224843
Ensembl Transcript ID: ENST00000607607
Location (hg38): chr6:26956992-26974367
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5607 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607607.1; ENST00000607607.5
Alternative gene names: ENSG00000224843.2; LINC00240; ENSG00000224843.6; bA373D17.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.5363 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00240:1 no no no no

Available literature

  1. Yang (2016), Construction of differential mRNA-lncRNA crosstalk networks based on ceRNA hypothesis uncover key roles of lncRNAs implicated in esophageal squamous cell carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIST1H2AG-3:2
4.0 LINC00240:1
4.1 LINC00240:1
5.0 LINC00240:1
5.1 LINC00240:1
5.2 LINC00240:1