Transcript: LINC00240:3

Basic information

LNCipedia transcript ID: LINC00240:3 
LNCipedia gene ID: LINC00240
RefSeq ID: NR_026775
Location (hg38): chr6:26956993-27023974
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 977 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT108320; NR_026775; NR_026775.2
Alternative gene names: bA373D17.1; LINC00240


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.0919 non-coding 
CPAT coding probability 4.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00240:3 no no no no

Available literature

  1. Yang (2016), Construction of differential mRNA-lncRNA crosstalk networks based on ceRNA hypothesis uncover key roles of lncRNAs implicated in esophageal squamous cell carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIST1H2AG-3:4
4.0 LINC00240:3
4.1 LINC00240:3
5.0 LINC00240:3
5.1 LINC00240:3
5.2 LINC00240:3