Transcript: LINC00240:5

Basic information

LNCipedia transcript ID: LINC00240:5 
LNCipedia gene ID: LINC00240
Location (hg38): chr6:26957100-26969071
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 203 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011754; NONHSAT108321
Alternative gene names: XLOC_005216; linc-HIST1H2AG-2; bA373D17.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.9611 non-coding 
CPAT coding probability 1.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00240:5 no no no no

Available literature

  1. Yang (2016), Construction of differential mRNA-lncRNA crosstalk networks based on ceRNA hypothesis uncover key roles of lncRNAs implicated in esophageal squamous cell carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HIST1H2AG-3:1
3.1 lnc-HIST1H2AG-3:1
4.0 LINC00240:5
4.1 LINC00240:5
5.0 LINC00240:5
5.1 LINC00240:5
5.2 LINC00240:5