Transcript: LINC00240:8

Basic information

LNCipedia transcript ID: LINC00240:8 
HGNC Gene Symbol: LINC00240    
HGNC Full Gene Name: long intergenic non-protein coding RNA 240
Ensembl Gene ID: ENSG00000224843
Ensembl Transcript ID: ENST00000420081
Location (hg38): chr6:27020636-27023924
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 339 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420081; ENST00000420081.1; LINC00240-002; OTTHUMT00000040134.1; NONHSAT108327
Alternative gene names: ENSG00000224843; NCRNA00240; ENSG00000224843.1; LINC00240; OTTHUMG00000014466.1; ENSG00000224843.2; ENSG00000224843.6; bA373D17.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.0919 non-coding 
CPAT coding probability 7.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00240:8 no no no no

Available literature

  1. Yang (2016), Construction of differential mRNA-lncRNA crosstalk networks based on ceRNA hypothesis uncover key roles of lncRNAs implicated in esophageal squamous cell carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HIST1H2AG-2:2
3.1 lnc-HIST1H2AG-2:2
4.0 LINC00240:8
4.1 LINC00240:8
5.0 LINC00240:8
5.1 LINC00240:8
5.2 LINC00240:8