Transcript: LINC00240:9

Basic information

LNCipedia transcript ID: LINC00240:9 
LNCipedia gene ID: LINC00240
Location (hg38): chr6:27022529-27023905
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 340 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT108328
Alternative gene names: bA373D17.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.0919 non-coding 
CPAT coding probability 7.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00240:9 no no no no

Available literature

  1. Yang (2016), Construction of differential mRNA-lncRNA crosstalk networks based on ceRNA hypothesis uncover key roles of lncRNAs implicated in esophageal squamous cell carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIST1H2AG-3:7
4.0 LINC00240:9
4.1 LINC00240:9
5.0 LINC00240:9
5.1 LINC00240:9
5.2 LINC00240:9