Transcript: LINC00254:5

Basic information

LNCipedia transcript ID: LINC00254:5 
HGNC Gene Symbol: LINC00254    
HGNC Full Gene Name: long intergenic non-protein coding RNA 254
Ensembl Gene ID: ENSG00000281219
Ensembl Transcript ID: ENST00000563416
RefSeq ID: NR_033914
Location (hg38): chr16:1878285-1884231
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 662 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT052020; NR_033914; ENST00000563416.3; NR_033914.1
Alternative gene names: ENSG00000281219.2; LINC00254


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.3772 non-coding 
CPAT coding probability 4.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00254:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HS3ST6-1:1
4.0 lnc-HS3ST6-1:1
4.1 lnc-HS3ST6-1:1
5.0 lnc-HS3ST6-1:1
5.1 LINC00254:3
5.2 LINC00254:5