Transcript: LINC00265:13

Basic information

LNCipedia transcript ID: LINC00265:13 
HGNC Gene Symbol: LINC00265    
HGNC Full Gene Name: long intergenic non-protein coding RNA 265
Ensembl Gene ID: ENSG00000188185
Ensembl Transcript ID: ENST00000448955
Location (hg38): chr7:39781689-39789425
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 468 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000448955; ENST00000448955.1; LINC00265-003; OTTHUMT00000339280.1; NONHSAT120228
Alternative gene names: ENSG00000188185; NCRNA00265; ENSG00000188185.6; LINC00265; OTTHUMG00000155273.1; ENSG00000188185.7; ENSG00000188185.11; NCRNA00265-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.6469 non-coding 
CPAT coding probability 2.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00265:13 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RALA-1:7
3.1 lnc-RALA-1:7
4.0 LINC00265:13
4.1 LINC00265:13
5.0 LINC00265:13
5.1 LINC00265:13
5.2 LINC00265:13