Transcript: LINC00265:6

Basic information

LNCipedia transcript ID: LINC00265:6 
HGNC Gene Symbol: LINC00265    
HGNC Full Gene Name: long intergenic non-protein coding RNA 265
Ensembl Gene ID: ENSG00000188185
Ensembl Transcript ID: ENST00000340510
Location (hg38): chr7:39733632-39793092
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3049 bp
Exons: 12
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000340510; ENST00000340510.4; LINC00265-001; OTTHUMT00000339278.1; ENST00000340510.8
Alternative gene names: ENSG00000188185; NCRNA00265; ENSG00000188185.6; LINC00265; OTTHUMG00000155273.1; ENSG00000188185.7; ENSG00000188185.11; NCRNA00265-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 79.0349 coding 
CPAT coding probability 52.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00265:6 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RALA-1:1
3.1 lnc-RALA-1:1
4.0 LINC00265:6
4.1 LINC00265:6
5.0 LINC00265:6
5.1 LINC00265:6
5.2 LINC00265:6