Transcript: LINC00272:1

Basic information

LNCipedia transcript ID: LINC00272:1 
LNCipedia gene ID: LINC00272
RefSeq ID: NR_034131
Location (hg38): chr1:182407621-182414813
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 738 bp
Exons: 4
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000009; NR_034131; NR_034131.1
Alternative gene names: XLOC_000485; linc-RGSL1-1; RP1-223H12.3; LINC00272


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.0932 non-coding 
CPAT coding probability 2.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00272:1 no no no no

Available literature

  1. Silva (2003), Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGSL1-1:1
3.1 lnc-RGSL1-1:2
4.0 LINC00272:1
4.1 LINC00272:1
5.0 LINC00272:1
5.1 LINC00272:1
5.2 LINC00272:1