Transcript: LINC00272:3

Basic information

LNCipedia transcript ID: LINC00272:3 
HGNC Gene Symbol: LINC00272    
HGNC Full Gene Name: long intergenic non-protein coding RNA 272
Ensembl Gene ID: ENSG00000203729
Ensembl Transcript ID: ENST00000612603
Location (hg38): chr1:182407771-182409332
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 432 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000612603.1
Alternative gene names: ENSG00000203729.8; LINC00272; RP1-223H12.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -60.0932 non-coding 
CPAT coding probability 2.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00272:3 no no no no

Available literature

  1. Silva (2003), Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00272:3
4.1 LINC00272:3
5.0 LINC00272:3
5.1 LINC00272:3
5.2 LINC00272:3