Transcript: LINC00273:2

Basic information

LNCipedia transcript ID: LINC00273:2 
HGNC Gene Symbol: LINC00273    
HGNC Full Gene Name: long intergenic non-protein coding RNA 273
Ensembl Gene ID: ENSG00000256642
Ensembl Transcript ID: ENST00000539813
RefSeq ID: NR_038368
Location (hg38): chr16:34158585-34160036
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1452 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT142134; NR_038368; ENST00000539813.1; NR_038368.1
Alternative gene names: ENSG00000256642.1; LINC00273; TOP; NCRNA00273-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 594.9118 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00273:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LINC00273-10:2
4.0 LINC00273:2
4.1 LINC00273:2
5.0 LINC00273:2
5.1 LINC00273:2
5.2 LINC00273:2