Transcript: LINC00279:1

Basic information

LNCipedia transcript ID: LINC00279:1 
LNCipedia gene ID: LINC00279
Location (hg38): chrY:8638294-8645399
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 693 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017609; ENST00000413486; ENST00000413486.1; LINC00279-001; OTTHUMT00000098853.1; NONHSAT139389
Alternative gene names: XLOC_008286; linc-TSPY4-3; ENSG00000232348; NCRNA00279; ENSG00000232348.1; LINC00279; OTTHUMG00000041258.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.2841 non-coding 
CPAT coding probability 3.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00279:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPY4-3:1
3.1 lnc-TSPY4-3:1
4.0 LINC00279:1
4.1 LINC00279:1
5.0 LINC00279:1
5.1 LINC00279:1
5.2 LINC00279:1