Transcript: LINC00290:2

Basic information

LNCipedia transcript ID: LINC00290:2 
HGNC Gene Symbol: LINC00290    
HGNC Full Gene Name: long intergenic non-protein coding RNA 290
Ensembl Gene ID: ENSG00000248197
Ensembl Transcript ID: ENST00000512487
RefSeq ID: NR_033918
Location (hg38): chr4:181064089-181159149
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 593 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000512487; ENST00000512487.1; LINC00290-001; OTTHUMT00000361848.1; NONHSAT099415; NR_033918.1
Alternative gene names: ENSG00000248197; NCRNA00290; ENSG00000248197.1; LINC00290; OTTHUMG00000160706.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -292.3649 non-coding 
CPAT coding probability 2.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00290:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCTD-5:2
3.1 lnc-DCTD-7:1
4.0 LINC00290:2
4.1 LINC00290:2
5.0 LINC00290:2
5.1 LINC00290:2
5.2 LINC00290:2