Transcript: LINC00298:1

Basic information

LNCipedia transcript ID: LINC00298:1 
HGNC Gene Symbol: LINC00298    
HGNC Full Gene Name: long intergenic non-protein coding RNA 298
Ensembl Gene ID: ENSG00000235665
Ensembl Transcript ID: ENST00000456681
Location (hg38): chr2:7924154-8278084
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 746 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003194; ENST00000456681; ENST00000456681.1; AC007464.1-002; OTTHUMT00000323255.1; NONHSAT068975
Alternative gene names: XLOC_001973; linc-CMPK2-7; ENSG00000235665; AC007464.1; ENSG00000235665.1; OTTHUMG00000151595.1; LINC00298; ENSG00000235665.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.0083 non-coding 
CPAT coding probability 4.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00298:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIDINS220-5:1
3.1 lnc-KIDINS220-7:1
4.0 LINC00298:1
4.1 LINC00298:1
5.0 LINC00298:1
5.1 LINC00298:1
5.2 LINC00298:1