Transcript: LINC00299:5

Basic information

LNCipedia transcript ID: LINC00299:5 
LNCipedia gene ID: LINC00299
Location (hg38): chr2:8007772-8328419
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1999 bp
Exons: 9
Sources: Broad Institute
Alternative transcript names: TCONS_00002661
Alternative gene names: XLOC_001974; linc-CMPK2-2; FLJ45673


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.7113 non-coding 
CPAT coding probability 1.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00299:5 no no no no

Available literature

  1. Talkowski (2012), Disruption of a large intergenic noncoding RNA in subjects with neurodevelopmental disabilities., Am. J. Hum. Genet.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIDINS220-4:4
3.1 lnc-KIDINS220-6:3
4.0 LINC00299:5
4.1 LINC00299:5
5.0 LINC00299:5
5.1 LINC00299:5
5.2 LINC00299:5