Transcript: LINC00305:6

Basic information

LNCipedia transcript ID: LINC00305:6 
HGNC Gene Symbol: LINC00305    
HGNC Full Gene Name: long intergenic non-protein coding RNA 305
Ensembl Gene ID: ENSG00000179676
Ensembl Transcript ID: ENST00000454647
Location (hg38): chr18:64080302-64098610
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 339 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454647; ENST00000454647.1; LINC00305-002; OTTHUMT00000134072.2; NONHSAT059683
Alternative gene names: ENSG00000179676; NCRNA00305; ENSG00000179676.6; LINC00305; OTTHUMG00000060637.2; MGC39571; HsT1235


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.7224 non-coding 
CPAT coding probability 36.78% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00305:6 no no no no

Available literature

  1. Zhang (2017), Long noncoding RNA LINC00305 promotes inflammation by activating the AHRR-NF-κB pathway in human monocytes., Sci Rep
  2. Zhang (2017), Long intergenic noncoding RNA 00305 sponges miR-136 to regulate the hypoxia induced apoptosis of vascular endothelial cells., Biomed. Pharmacother.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SERPINB3-1:3
3.1 lnc-SERPINB3-1:3
4.0 LINC00305:6
4.1 LINC00305:6
5.0 LINC00305:6
5.1 LINC00305:6
5.2 LINC00305:6