Transcript: LINC00307:1

Basic information

LNCipedia transcript ID: LINC00307:1 
HGNC Gene Symbol: LINC00307    
HGNC Full Gene Name: long intergenic non-protein coding RNA 307
Ensembl Gene ID: ENSG00000227342
Ensembl Transcript ID: ENST00000451410
RefSeq ID: NR_038855
Location (hg38): chr21:30209151-30211783
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 424 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028913; ENST00000451410; ENST00000451410.1; LINC00307-001; OTTHUMT00000182259.1; NONHSAT081657; NR_038855; NR_038855.1
Alternative gene names: XLOC_014049; linc-CLDN17; ENSG00000227342; NCRNA00307; ENSG00000227342.1; LINC00307; OTTHUMG00000081871.1; D21S2091E


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00307:1 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLDN8-1:1
3.1 lnc-CLDN8-1:1
4.0 LINC00307:1
4.1 LINC00307:1
5.0 LINC00307:1
5.1 LINC00307:1
5.2 LINC00307:1