Transcript: LINC00309:2

Basic information

LNCipedia transcript ID: LINC00309:2 
HGNC Gene Symbol: LINC00309    
HGNC Full Gene Name: long intergenic non-protein coding RNA 309
Ensembl Gene ID: ENSG00000230923
Ensembl Transcript ID: ENST00000431020
RefSeq ID: NR_033837
Location (hg38): chr2:64185078-64205485
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3307 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000431020; ENST00000431020.1; LINC00309-001; OTTHUMT00000327085.1; NONHSAT147093; NR_033837.1
Alternative gene names: ENSG00000230923; NCRNA00309; ENSG00000230923.1; LINC00309; OTTHUMG00000152633.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.5794 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00309:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PELI1-2:2
3.1 lnc-PELI1-2:1
4.0 LINC00309:2
4.1 LINC00309:2
5.0 LINC00309:2
5.1 LINC00309:2
5.2 LINC00309:2