Transcript: LINC00311:2

Basic information

LNCipedia transcript ID: LINC00311:2 
HGNC Gene Symbol: LINC00311    
HGNC Full Gene Name: long intergenic non-protein coding RNA 311
Ensembl Gene ID: ENSG00000179219
Ensembl Transcript ID: ENST00000366314
Location (hg38): chr16:85282958-85285963
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1566 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00024296; ENST00000366314; ENST00000366314.4; LINC00311-001; OTTHUMT00000269085.1; NONHSAT144116
Alternative gene names: XLOC_011808; linc-KIAA0182-1; ENSG00000179219; NCRNA00311; ENSG00000179219.5; LINC00311; OTTHUMG00000137643.1; MGC22001


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.9669 non-coding 
CPAT coding probability 26.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00311:2 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-680G10.1.1-1:1
3.1 lnc-RP11-680G10.1.1-1:1
4.0 LINC00311:2
4.1 LINC00311:2
5.0 LINC00311:2
5.1 LINC00311:2
5.2 LINC00311:2