Transcript: LINC00312:1

Basic information

LNCipedia transcript ID: LINC00312:1 
LNCipedia gene ID: LINC00312
Location (hg38): chr3:8571782-8573875
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2094 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000442796.2; LINC00312-001; OTTHUMT00000337844.2
Alternative gene names: ENSG00000237697.2; LINC00312; OTTHUMG00000154967.2; NAG7; NAG-7; ERR10; ERR-10; LMCD1DN


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.2665 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00312:1 yes no no no

Available literature

  1. Romero (2014), Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor at term., J. Matern. Fetal. Neonatal. Med.
  2. Zhang (2013), Expression of LINC00312, a long intergenic non-coding RNA, is negatively correlated with tumor size but positively correlated with lymph node metastasis in nasopharyngeal carcinoma., J. Mol. Histol.
  3. Zhang (2003), Expression of tumor related genes NGX6, NAG-7, BRD7 in gastric and colorectal cancer., World J. Gastroenterol.
  4. Tan (2002), Effects of NPC-associated gene NAG7 on cell cycle and apoptosis in nasopharyngeal carcinoma cells., Ai Zheng


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LMCD1-1:1
4.0 LINC00312:1
4.1 LINC00312:1
5.0 LINC00312:1
5.1 LINC00312:1
5.2 LINC00312:1