Transcript: LINC00313:1

Basic information

LNCipedia transcript ID: LINC00313:1 
LNCipedia gene ID: LINC00313
Location (hg38): chr21:43475891-43480787
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1523 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029307; NONHSAT082431
Alternative gene names: XLOC_014105; linc-SIK1-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.9694 non-coding 
CPAT coding probability 2.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00313:1 no no no no

Available literature

  1. Li (2015), Differentially expressed protein-coding genes and long noncoding RNA in early-stage lung cancer., Tumour Biol.
  2. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIK1-4:1
3.1 lnc-SIK1-4:1
4.0 LINC00313:1
4.1 LINC00313:1
5.0 LINC00313:1
5.1 LINC00313:1
5.2 LINC00313:1