Transcript: LINC00313:24

Basic information

LNCipedia transcript ID: LINC00313:24 
HGNC Gene Symbol: LINC00313    
HGNC Full Gene Name: long intergenic non-protein coding RNA 313
Ensembl Gene ID: ENSG00000185186
Ensembl Transcript ID: ENST00000413721
Location (hg38): chr21:43462112-43464816
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 525 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028948; ENST00000413721; ENST00000413721.1; LINC00313-005; OTTHUMT00000195630.1; NONHSAT082420; ENST00000413721.5
Alternative gene names: XLOC_014105; linc-SIK1-2; ENSG00000185186; NCRNA00313; ENSG00000185186.4; LINC00313; OTTHUMG00000086867.1; ENSG00000185186.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.9119 non-coding 
CPAT coding probability 9.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00313:24 no no no no

Available literature

  1. Li (2015), Differentially expressed protein-coding genes and long noncoding RNA in early-stage lung cancer., Tumour Biol.
  2. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIK1-4:17
3.1 lnc-SIK1-4:17
4.0 LINC00313:24
4.1 LINC00313:24
5.0 LINC00313:24
5.1 LINC00313:24
5.2 LINC00313:24