Transcript: LINC00313:28

Basic information

LNCipedia transcript ID: LINC00313:28 
LNCipedia gene ID: LINC00313
Location (hg38): chr21:43439575-43460782
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 392 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029161; NONHSAT082406
Alternative gene names: XLOC_014105; linc-SIK1-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.3568 non-coding 
CPAT coding probability 1.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00313:28 no no no no

Available literature

  1. Li (2015), Differentially expressed protein-coding genes and long noncoding RNA in early-stage lung cancer., Tumour Biol.
  2. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIK1-4:18
3.1 lnc-SIK1-4:18
4.0 LINC00313:28
4.1 LINC00313:28
5.0 LINC00313:28
5.1 LINC00313:28
5.2 LINC00313:28